Partek Course on Microarray and NGS

Course date: 25 February 2014 - 26 February 2014
Location: Erasmus MC, Ee 15.28

Partek Course on Microarray and NGS

Hands-on two-day course in a computer room at the Erasmus MC.

The workshop is an introductory level course intended for those with novice or intermediate skills in the subject matter

The course will be given by Dr Ivan Lukic and Dr Joerg Mages. Both Ivan and Joerg have been Field Application Scientists with Partek Incorporated for approximately 3 years. They are part of the Partek Support group who offer face to face, email and telephone support to Partek customers world wide. Prior to joining Partek, Ivan held a similar role with LifeTech and Joerg a number of senior scientific research posts.

Registration fee
Thanks to Partek this course, including lunch, will be free of charge for all participants. 

Detailed program

Tuesday, February 25: Microarray Analysis
9.30 am - 5.45 pm

9:30           Overview of the Partek portfolio for microarray and NGS analysis
                 Introduction to Statistics & Experimental Design
10.15          Coffee break
10:45          Hands-on exercise: Gene expression workflow
12:00          Lunch
13:00          Hands-on exercise: The Partek Batch Removal tool
14:15          Hands-on exercise: microRNA analysis and integration with expression data
15.15          Coffee break
15:45          Hands-on exercise: Data visualisation in Partek Genomics Suite

Wednesday, February 26: Next Generation Sequencing Analysis
9.30 am - 6.00 pm

9:30           NGS analysis in Partek Flow
                 Live demo: RNA-seq workflow
10.30          Coffee break
11:00          Hands-on exercise: Basic RNA-seq analysis (PGS)
12:30          Lunch
13:30          Hands-on exercise: Advanced RNA-seq analysis (PGS)
15:00          Hands-on exercise: Partek Pathway
15:30          Coffee break
16:00          Hands-on exercise: ChIP-seq analysis (PGS)


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