Workshop Ingenuity Pathway Analysis (IPA)

Course date: 19 January 2016 - 19 January 2016
Location: Erasmus MC

Click here to register for this course This course is fully booked! You can still register, but will be placed on a waiting list.



One-day hands-on training workhop by the team from Ingenuity about Ingenuity Pathway Analysis (IPA).

IPA Training – Tuesday 19th January
This hands-on training workshop will introduce new users to Ingenuity Pathway Analysis (http://www.ingenuity.com/products/ipa) for the biological interpretation of ‘omic data, and provide additional information for inexperienced users of the system. The training will use an RNA-Seq data set as a case study. For example, the temporal transcriptional changes observed during the differentiation of mouse embryonic stem cells to cardiomyocytes. The course will also highlight the considerations when analysing and integrating other data types such as proteomics or metabolomics data, and will touch on the analysis of miRNA.

Course Topics:

  • Introduction to QIAGEN Sample to Insight and Ingenuity Pathway Analysis (IPA)
  • Uploading data and running a Core Analysis
  • Interpreting a Core Analysis
    o Canonical Pathways Analysis
    o Upstream Regulator Analysis
    o Functional Analysis
    o Molecular Network Analysis
  • Search & Pathway Building; Search & Explore case study
  • Comparison Analysis
  • Sharing & Collaboration
  • Best Practice Tips & Tricks
  • Overview of other IPA analysis tools

Course times
9.30 - 17.00 hours

Course location
Computer room Ee-1528, Bioinformatics dept., Medical Faculty, Erasmus MC

ECTS
For this course you will receive a certificate of attendance with 0,4 ECTS for full participation.

Registration fee
The subscription fee of non-commercial participants for this course is € 200.

Discounts are handled as follows:

  • All PhD students get a discount of 50% and pay €100.
  • All participants from the postgraduate school MolMed receive a discount of 100% and pay €0.
  • All other Erasmus MC participants, incluing MGC & NIHES members, and master students from elsewhere get a discount of 50% and pay €100.
  • Master students from elsewhere who will need to pay the fee themselves, receive a discount of 75% and pay €50,00.

 


Click here to register for this course This course is fully booked! You can still register, but will be placed on a waiting list.




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