Galaxy for NGS

Course date: 12 May 2016 - 13 May 2016
Location: Erasmus MC Ee-15.28

Click here for details of programme
Click here to register for this course


 

Introduction

The course will focus on using the Galaxy platform (http://galaxyproject.org/) to analyse data from DNAseq and RNAseq experiments and provide the scientist a platform to communicate the output of an analysis back to the research team using iReport in Galaxy.

 

Location: room Ee-15.28

 

Audience

This training of is aimed at giving the clinical research scientists who is non-bioinformatician the necessary skills to understand and successfully work with next-generation sequencing (NGS) data.

 

Course objectives

The course will be given as a series of lectures and practical’s designed such that by the end of the course the participant will expected to know:

· How to use Galaxy for data analysis and NGS analysis

· How to analyse an RNAseq experiment

· Enhanced variant analysis in RNAseq

· How to create and interpret an integrative cancer study (SNV, CNV and SV)

· How to prioritize fusion gene results

 

Attached you can find the detailed course program.

This course is 1,0 ECTS.

 

Attendance fees
The subscription fee of non-commercial participants for this 2-day course is € 400. Discounts are handled as followed:

  • All PhD get a discount of 50% and pay €200,00.
  • All participants from the postgraduate school MolMed get a discount of 100% and pay €0.
  • Research master students pay based on 100 euro per ECTS.
  • All master students who have to pay themselves (so, not from their course budget) receive 75% discount, and will need to pay €100,00.

Fee for commercial participants is available upon request.

 

General information

Financial regulation of the Postgraduate School Molmed

 

The following financial rules apply:

 

Non-commercial course, symposium or workshop fee: €200/day, €750/week

 

• Participants of the postgraduate school MolMed: discount of 100%.
• Other Erasmus MC participants, e.g. of MGC, COEUR, NIHES: discount of 50%.
• PhD students and Master’s students, regardless of institution: discount of 50%.
• Master’s students who are paying the fee from their personal budget: discount of 75%.

 

However, the Research Management course and the workshops Photoshop/Illustrator/Indesign have to be paid from the ‘personal budget’ of employees, MolMed members and PhD students included. So they will receive an invoice from us which you have to pay and which will be reimbursed by your Department.

 

There is one fee for the entire course. There is no reduction for partial participation.

The SPSS Course and the R Course have shorter course days. The SPSS Course counts as a 2-days course and the R Course as a 3-days course.

 

Commercial participants & sponsors: companies are invited to inquire about commercial participant tuition fees and about sponsoring.

Those who register for a course, symposium or workshop agree with these financial conditions.

 

 

 

 



Click here for details of programme
Click here to register for this course


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