Galaxy for NGS


Location: Erasmus MC

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Course 
Galaxy for NGS
 
Description
The course will focus on using the Galaxy platform (http://galaxyproject.org/) to analyse data from DNAseq and RNAseq experiments and provide the scientist a platform to communicate the output of an analysis back to the research team using iReport in Galaxy. 
 
Course objectives 
The course will be given as a series of lectures and practical’s designed such that by the end of the course the participant will expected to know: 
• How to use Galaxy for data analysis and NGS analysis 
• How to analyse an RNAseq experiment 
• Enhanced variant analysis in RNAseq 
• How to create and interpret an integrative cancer study (SNV, CNV and SV) 
• How to prioritize fusion gene results 


Audience and participation
This training of is aimed at giving the clinical research scientists who is non-bioinformatician the necessary skills to understand and successfully work with next-generation sequencing (NGS) data. 


Teacher
Andrew Stubbs & Saskia Hiltemann


Date, Time & Location
T.b.a.

 

ECTS
Full participation is  0,7 ECTS.


Maps
www.molmed.nl/maps/maps.asp

 
Course fees:
If not otherwise indicated, Erasmus MC PhD courses are free for Erasmus MC PhD candidates and Research Master students who use them as electives. Erasmus MC employees pay €100/day. External PhD candidates pay €100/day. Commercial and other external participants pay €200/day. There is one fee for the entire course, there is no reduction for partial participation.

Cancellation policy:
Erasmus MC Graduate School charges a cancellation fee of €75 for all cancellations made more than 22 days before the start of the course. Fifty percent of the course fee, with a minimum of €75, is due for cancellations made between 21 and 10 days before the start date. The full course fee is due for cancellations made less than 10 days before the start date, or in case of no-show without cancellation. For Erasmus MC PhD candidates the full course fee in case of the cancellation policy will be the equivalent of the number of course days times €100. 

All invoices will be sent to the head of department or for external participants to the e-mail address provided upon registration. 

Those who register for a PhD course agree with these financial conditions.




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