Galaxy for NGS

Course date: 06 February 2017 - 08 February 2017
Location: Erasmus MC, Ee 15.28

Click here for details of programme
Click here to register for this course


Introduction

The course will focus on using the Galaxy platform (http://galaxyproject.org/) to analyse data from DNAseq and RNAseq experiments and provide the scientist a platform to communicate the output of an analysis back to the research team using iReport in Galaxy. In 2017 we will add a 3rd day on metagenomics analysis. 

Location:
room Ee-15.28
 

Audience

This training of is aimed at giving the clinical research scientists who is non-bioinformatician the necessary skills to understand and successfully work with next-generation sequencing (NGS) data. 

Course objectives

The course will be given as a series of lectures and practical’s designed such that by the end of the course the participant will expected to know:

· How to use Galaxy for data analysis and NGS analysis

· How to analyse an RNAseq experiment

· Enhanced variant analysis in RNAseq

· How to create and interpret an integrative cancer study (SNV, CNV and SV)

· How to prioritize fusion gene results 

Attached you can find the final course program.

ECTS

Attending this course gives you a certificate 1,0 ECTS.

Attendance fees

The subscription fee of non-commercial participants for this 3-day course is € 550. Discounts are handled as followed:

  • All PhD get a discount of 50% and pay €275,00.
  • All participants from the postgraduate school MolMed get a discount of 100% and pay €0.
  • Research master students pay based on 100 euro per ECTS.
  • All master students who have to pay themselves (so, not from their course budget) receive 75% discount, and will need to pay €137,50.

Fee for commercial participants is available upon request.

 

General information
Financial regulation of the Postgraduate School MolMed

From January 1st, 2017 the following financial rules apply, but they may differ per course still. Look at the course fee of each course to be sure which discounts are really applied:

Non-commercial course, symposium or workshop fee: €200/day, €750/week

• Participants of the postgraduate school MolMed: discount of 100%

• However, the Research Management course and the workshops Photoshop/Illustrator/Indesign have to be paid from the ‘personal budget’ of employees, MolMed members and PhD students included. So they will receive an invoice from us which you have to pay and which will be reimbursed by your Department. When you will pay from your personal budget you need to provide us your home address details for the invoice

• PhD students and Master’s students, regardless of institution: discount of 50%.

  • The course fees of research master’s studentswill be paid by their master program at rate of €100/ECTS. For not I&I master students: please inform your master program in advance whether they agree to pay.
  • Master’s students who are paying the fee from their private budget: discount of 75%. When you will pay from your personal budget you need to provide us your home address details for the invoice.
  • However, 2 courses in statistics are paid centrally by the Dept. of Research policy for all PhD students from Erasmus MC! These are R and the SPSS course. So for Erasmus MC PhD students, these courses are always free, provided you are officially registered as a PhD student.

There is one fee for the entire course. There is no reduction for partial participation.

Some courses have less course days: SPSS 3 days, Survival Analysis 2 days, Management 2 days, Presenting 1,5 days and also other may be shorter as indicated on the website.

Commercial participants, companies & sponsors are invited to inquire about commercial tuition fees and about sponsoring.

All invoices will be sent by email to the mail address that you filled in upon registration. If this address is not correct we use your Erasmus MC address.

Those who register for a course, symposium or workshop agree with these financial conditions.


 

 

 



Click here for details of programme
Click here to register for this course


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