QUIAGEN CLC User Group meeting/ CLC & IPA Training/ Precision Medicine Conference

Course date: 26 May 2020 - 28 May 2020
Location: EMC Ae.4-06, Ee 15.28

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Title event
QUIAGEN CLC User Group meeting/ CLC & IPA Training/ Precision Medicine Conference

Discription: 3 days event, meeting, training and conference
 
Day 1: QIAGEN CLC Genomics Workbench User Group Meeting
This event is designed to improve your research using CLC’s powerful features, share user experiences and provide training, support, and networking opportunities with fellow CLC community members and the QIAGEN team.
There will be expert talks on the following Topic Areas:
  • Solutions for handling large sample sizes: metadata, workflows, reference data.
  • Biomedical genomics: panel data analysis, variant calling, variant filtering, performance evaluation.
  • Workflows for QIAseq panels, routine testing, oncology, and inherited workflows 
  • Microbiome analysis: 16S, whole metagenome shotgun sequencing etc
  • Clinical Microbiology: wg/cgMLST, Minimum spanning trees etc.
  • Transcriptomics: de novo assembly, RNAseq, miRNA etc.

Date, Time & Location 
26 mei: Ae 4.06 EMC
Time Schedule:
Coffee 9.30
Coffee break 10.45
Lunch 12.30
Coffee 14.30

Day 2: Training on CLC Genomics Workbench 20 and Ingenuity Pathway Analysis (IPA).
This hands-on training workshop will introduce users to the CLC Genomics Workbench 20 for fast and efficient processing and visualization of Human NGS data. Ingenuity Pathway Analysis (IPA) will be used to put the results into biological context. Furthermore, QIAGEN Clinical Insight (QCI),which allows the annotation, filtering and assess the pathogenicity of variants, will be presented.

The case study will cover the basics of data visualization, quality control (QC), creation of user-constructed workflows, and the identification of variants from targeted human DNA resequencing using the Workbench. The biological context and significance of the variants will then be interpreted using IPA and QCI, respectively.

Topics
Introduction to QIAGEN Sample to Insight, CLC Genomics Workbench 20 and Ingenuity Pathway Analysis
  • Getting Started with the CLC Genomics Workbench 20
  • Handling fastq data and performing QC
  • Read mapping to reference genome, coverage and QC
  • Variant Calling and variant-level annotation
  • Workflows for different data types
  • Integrating the Workbench with QCI for annotating and assessing pathogenic variants.
  • Advanced Analysis Tips and Tricks
  • RNAseq with CLC and IPA
  • In depth training using IPA

Date, Time & Location 
27 mei: EMC Ee 15.28
Time Schedule:
Coffee 9.30
Coffee break 10.45
Lunch 12.30
Coffee 14.30

ECTS
Only for day 2: 0,3 ECTS.

Day 3: Precision Medicine Conference
More information will follow soon.
 
Important!
The list of registrants will also be shared with QIAGEN

Maps
www.molmed.nl/maps/maps.asp

Course fees 
Registration is free of charge.


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